Research Projects
Showcasing the projects myself and our lab has worked on.
ANYA
Giving control of complex artificial life systems to an LLM agent.
COVID-19 Case Prediction Model Comparison
An advanced COVID-19 case prediction model comparing LSTM/GRU, ARIMA, Random Forest, and XGBoost algorithms.
From Dungeons and Dragons to Proteins and Predictions
A dive into protein predictions and conformational changes in the cellular transport protein Rab3a.
Machine Learning Cookbook for Epidemiological Modeling and Viral Genomics
Machine Learning Cookbook for Epidemiological Modeling and Viral Genomics Introduction Welcome to this technical jo...
MambaVirus
MambaVirus is a 1 billion parameter foundational genomic model trained on labeled viral genomes, genes, and instructi...
Modeling Novel Proteins of Mutant Human Cytomegalovirus
Structural analysis of mutant Rab3A proteins in recombinant HCMV strains.
System for Operational Modeling of Biological Replication and Adaptation (SOMBRA)
A system to generate artificial HCMV genomes and simulate evolution to characterize geographical strain diversity.
VIRUSBERT
A 110-million BERT model designed to detect and classify viral genomes.
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